Jun Yuan¹, Rongpeng Liu⁴, Xiaoyun Wang^3,*, Haihui Fu^2,*

Phyton-International Journal of Experimental Botany, Vol.93, No.9, pp. 2267-2284, 2024, DOI:10.32604/phyton.2024.055338 - 30 September 2024

Abstract Cadmium (Cd) has seriously affected the quality of traditional Chinese medicinal material Salvia miltiorrhiza in recent years, threatening human health. The physiological and metabolic profiles of S. miltiorrhiza in response to Cd stress have been revealed in previous studies. However, transcriptional and post-transcriptional regulation in response to different degrees of Cd (0, 25, 50, and 100 mg/kg) stress in S. miltiorrhiza remains unclear. Here, transcriptome atlas in S. miltiorrhiza under different degrees of Cd Stress was unveiled using RNA sequencing (RNA-seq). These results showed that the profiles of gene expression were different in the response to Cd treatment. Defense More >

Mengyuan Li¹, Zhongye Gao^1,2, Lina Jiang¹, Leishan Chen^1,2,*, Jianhui Ma^1,*

Phyton-International Journal of Experimental Botany, Vol.93, No.2, pp. 329-342, 2024, DOI:10.32604/phyton.2024.046976 - 27 February 2024

Abstract Abscisic acid (ABA), hydrogen peroxide (H₂O₂) and ascorbate (AsA)–glutathione (GSH) cycle are widely known for their participation in various stresses. However, the relationship between ABA and H₂O₂ levels and the AsA–GSH cycle under drought stress in wheat has not been studied. In this study, a hydroponic experiment was conducted in wheat seedlings subjected to 15% polyethylene glycol (PEG) 6000–induced dehydration. Drought stress caused the rapid accumulation of endogenous ABA and H₂O₂ and significantly decreased the number of root tips compared with the control. The application of ABA significantly increased the number of root tips, whereas the application… More >

Jie Zhang¹, Yingwei Zhao², Hongying Li³, Jianwei Ni^4,*, Dongmei Wang^1,*

Phyton-International Journal of Experimental Botany, Vol.92, No.9, pp. 2591-2610, 2023, DOI:10.32604/phyton.2023.028338 - 28 July 2023

Abstract Paper mulberry is a high-quality woody feed resource plant with high crude protein content. It is widely distributed in China and has excellent characteristics of salt and alkali tolerance. Paper mulberry has ecological and economic importance. Salt stress has become a critical factor with the increasing degree of soil salinity that restricts plant growth. In the saline-alkali environments, transcriptome expression is altered leading to phenotypic defects in most plants. However, the regulatory mechanism related to paper mulberry’s salt-stress (SS) response is not clearly understood. In the present study de novo transcriptomic assembly was performed, and gene… More >

Yue Jin¹, Lulu Zhi¹, Xin Tang¹, Yilin Chen¹, John T. Hancock², Xiangyang Hu^1,*

Phyton-International Journal of Experimental Botany, Vol.92, No.8, pp. 2211-2225, 2023, DOI:10.32604/phyton.2023.026595 - 25 June 2023

Abstract Gamma-aminobutyric acid (GABA) is a ubiquitous four-carbon non-protein amino acid that is involved in various physiological processes of plant growth and development, such as root architecture, stem elongation, leaf senescence, pollen tube growth, fruit ripening, and seed germination. GABA is also related to plant stress responses, such as drought, salt, cold, and heat stresses. Regulation of GABA in plant stress responses is complex and involves multiple signaling pathways, including calcium and hormone signaling. This paper systematically reviews the synthesis, metabolic pathways and regulatory role of GABA in plants, which will provide new insights into the More >

Sang Ik Song^*

Phyton-International Journal of Experimental Botany, Vol.92, No.7, pp. 2017-2034, 2023, DOI:10.32604/phyton.2023.027469 - 29 May 2023

Abstract Small ubiquitin-like modifier (SUMO) E3 ligases that facilitate the conjugation of SUMO proteins to target substrates contain an SP-RING domain which is like the RING domain found in ubiquitin E3 ligases. In this study, we isolated and characterized the Oryza sativa protein inhibitor of activated STAT like1 (OsPIAL1) containing SP-RING domains, as the rice homolog of Arabidopsis PIALs. OsPIAL1 interacts with OsSUMO proteins but does not interact with rice SUMO-conjugating enzymes (OsSCEs). An analysis of transgenic rice plant shows that OsPIAL1 is involved in SUMO conjugation to SCEs but not in SUMO conjugation to substrates. In addition,… More >

XIAOHONG FU^1,#, JIE ZHAO^3,#, DANDAN CAO^1,2, CHENGXING HE^1,2, ZIYI WANG¹, YIBEI JIANG¹, JIANFENG LIU^1,*, GUIXIA LIU^1,*

BIOCELL, Vol.47, No.4, pp. 905-917, 2023, DOI:10.32604/biocell.2023.026930 - 08 March 2023

Abstract Allium senescens, is an important economic and ecological grassland plant with drought-resistant characteristics. A TCP protein transcription factor is important in the regulation of plant development and adverse responses. However, the mechanism by which TCP transcription functions in drought resistance in Allium senescens is still not clear. Here, we obtained a total of 190,305 transcripts with 115,562 single gene clusters based on RNA-Seq sequencing of Allium senescens under drought stress. The total number of bases was 97,195,096 bp, and the average length was 841.06 bp. Furthermore, we found that there were eight genes of the TCP family that… More >

Di Wang^1,#,*, Hao Gao^1,#, Jian Wang¹, Baoshan Cheng¹, Gang Li¹, Weijun Xu¹, Xi Liu^2,3,*

Phyton-International Journal of Experimental Botany, Vol.92, No.4, pp. 1173-1183, 2023, DOI:10.32604/phyton.2023.026526 - 06 January 2023

Abstract Although tocopherols are essential for rice development, the molecular details by which their absence affects development remain to be determined. To study how tocopherols function during rice development, we performed a transcriptome deep sequencing (RNA-seq) analysis of the rice cultivar Nipponbare (Nip) and the tocopherol-deficient mutant small grain and dwarf 1-2 (sgd1-2). We identified 563 differentially expressed genes that were enriched in Gene Ontology categories associated with metabolism, stress, cellular responses, and transcriptional regulation. We determined that the total fatty acid composition of Nip and sgd1-2 was comparable, although cell membrane penetrability in sgd1-2 was significantly higher than… More >

Bingsong Yang^1,2,#, Xiaomeng Shi^2,#, Tingting Guo^1,2, Meixia Liang^1,2,*

Phyton-International Journal of Experimental Botany, Vol.92, No.2, pp. 559-575, 2023, DOI:10.32604/phyton.2022.024266 - 12 October 2022

Abstract Low temperature is one of the adversities threatening the growth and development and reduces the yield of rubber trees. However, molecular mechanisms toward rubber trees in response to low temperature are largely unclear. In this study, 7,159 and 7,600 differentially expressed genes (DEGs) were identified in ‘Reyan 73397’ rubber trees. Through GO analysis, the catalytic activity was the representative of the GO term in the only DEGs at the two studied temperatures (room temperature and 4°C, respectively), while KEGG analysis showed that carbon metabolism was the most important grouping under the comparison of these two More >

JINXIAN LIU¹, JINGFANG FENG², CHANG ZHANG², YONGJUAN REN², WEIHUA SU², GUANGHENG WU¹, XIANYU FU¹, NING HUANG³, YOUXIONG QUE², HUI LING^3,*, JUN LUO^2,*

BIOCELL, Vol.47, No.1, pp. 215-225, 2023, DOI:10.32604/biocell.2022.022477 - 26 September 2022

Abstract Calmodulin (CaM) proteins play a key role in signal transduction under various stresses. In the present study, the effects of a sugarcane ScCaM gene (NCBI accession number: GQ246454) on drought and salt stress tolerance in transgenic Arabidopsis thaliana and Escherichia coli cells were evaluated. The results demonstrated a significant negative role of ScCaM in the drought and salt stress tolerance of transgenic lines of A. thaliana, as indicated by the phenotypes. In addition, the expression of AtP5CS and AtRD29A, two genes tightly related to stress resistance, was significantly lower in the overexpression lines than in the wild type. The growth More >

Wenting Wu¹ , Yajing Zhang¹, Yu Gao¹, Kai Zhang^2,3, Luying Zhu^1,3,*, Hongxia Zhang^2,3

Phyton-International Journal of Experimental Botany, Vol.91, No.8, pp. 1629-1642, 2022, DOI:10.32604/phyton.2022.020515 - 14 April 2022

Abstract Leymus mollis, a wild relative of wheat, is very tolerant to salt stress, and has been considered as a valuable genetic resource for wheat breeding. However, the genetic basis for salt tolerance of this species is still largely unknown. In this study, de novo sequencing, assembly and analysis of L. mollis transcriptome in response to salt stress was performed. A total of 110,323 and 112,846 unigenes were generated for the NaCl-free (CK) and 180 mM NaCl-treated (CT) library, respectively. For the two libraries, 73,414 unigenes were successfully annotated in five common protein databases, and 7521 differentially expressed genes… More >