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  • Open Access

    ARTICLE

    Integrated Transcriptomics and Metabolomics Analysis for the Mechanism Underlying White-to-Pink Petal Color Transition in Hibiscus mutabilis Flowers

    Xiaodong Shi*, Tingyu Wang, Sui Ai, Jiasi Li

    Phyton-International Journal of Experimental Botany, Vol.93, No.10, pp. 2571-2581, 2024, DOI:10.32604/phyton.2024.056606 - 30 October 2024

    Abstract Cotton rose (Hibiscus mutabilis) is a well-known ornamental plant that produces large flowers of vibrant colors. However, metabolites in H. mutabilis flowers with vibrant color have not been fully understood. By performing a combined analysis of metabolomics and transcriptomics data, we here explored mechanisms for the production of primary active compounds in this plant. Multivariate statistics unveiled differences in flavonoid metabolism between white and pink flowers, with pink flowers exhibiting a greater flavonoid abundance. The white-to-pink transition of cotton rose flowers may be attributed to pelargonidin-3-O-glucoside formation. On examining the expression of genes related to the structure More > Graphic Abstract

    Integrated Transcriptomics and Metabolomics Analysis for the Mechanism Underlying White-to-Pink Petal Color Transition in <i>Hibiscus mutabilis</i> Flowers

  • Open Access

    ARTICLE

    Comparative Analysis of Organic and Compound Fertilizers on the Yield and Metabolites of Platostoma palustre

    Suhua Huang1,2, Hao Chen1,2, Fan Wei1,3, Changqian Quan1,3, Meihua Xu1,3, Zhining Chen4, Jingchun Li4, Hongyu Li5, Lijun Shi1,*, Danfeng Tang1,2,3,4,*

    Phyton-International Journal of Experimental Botany, Vol.93, No.10, pp. 2645-2662, 2024, DOI:10.32604/phyton.2024.053492 - 30 October 2024

    Abstract To explore the effect of fertilizers on the yield and quality of Platostoma palustre, in this study, P. palustre was utilized as the research material, and field experiments were conducted with different application rates of compound fertilizer and organic fertilizer and non-targeted metabolomics analysis was further employed to compare and analyze the differences in the metabolic components between the compound fertilizer and organic fertilizer treatments. The results of field experiments demonstrated that both compound and organic fertilizers could promote the fresh weight, shade dry weight, and dry weight of P. palustre, with 450 kg hm−2 compound fertilizer and 4500… More >

  • Open Access

    ARTICLE

    Arbuscular Mycorrhizal Fungi Improve Drought Tolerance of Quinoa Grown in Compost-Amended Soils by Altering Primary and Secondary Metabolite Levels

    Wissal Benaffari1,2,3, Fatima-Ezzahra Soussani1,2,4, Abderrahim Boutasknit1,2,5, Salma Toubali1,2,3, Abir Ben Hassine3, Hala Ben Ahmed3, Rachid Lahlali7,*, Abdelilah Meddich1,2,6,*

    Phyton-International Journal of Experimental Botany, Vol.93, No.9, pp. 2285-2302, 2024, DOI:10.32604/phyton.2024.055052 - 30 September 2024

    Abstract Quinoa (Chenopodium quinoa) has recently gained popularity as a pseudo-cereal cultivated in various countries due to the nutritional and antioxidant benefits of its seeds, and its capacity to persist in water-stressed environments. Our study aimed to assess the effects of native arbuscular mycorrhizal fungi (AMF) and local organic amendments on the metabolic responses and antioxidant activity of quinoa seeds under water-stressed conditions. To this end, quinoa plants were grown in soils inoculated with an indigenous mycorrhizal consortium AMF and amended with two types of compost from horse manure (HM) and green waste (GW) under two water… More >

  • Open Access

    REVIEW

    Plant Extracts as Biostimulant Agents: A Promising Strategy for Managing Environmental Stress in Sustainable Agriculture

    Mingzhao Han1, Susilawati Kasim1,*, Zhongming Yang2, Xi Deng2, Noor Baity Saidi3, Md Kamal Uddin1, Effyanti Mohd Shuib1

    Phyton-International Journal of Experimental Botany, Vol.93, No.9, pp. 2149-2166, 2024, DOI:10.32604/phyton.2024.054009 - 30 September 2024

    Abstract It is imperative to enhance crop yield to meet the demands of a burgeoning global population while simultaneously safeguarding the environment from adverse impacts, which is one of the dominant challenges confronting humanity in this phase of global climate change. To overcome this problem and reduce dependency on chemical fertilizer, scientists now view the implementation of biostimulant strategies as a cost-effective and environmentally friendly approach to achieving sustainable agriculture. Plant extracts are rich in bioactive phytocompounds, which can enhance plant resistance to disease, pest, and abiotic stresses (e.g., drought, salinity, and extreme temperature), and promote… More >

  • Open Access

    ARTICLE

    Integrated GC-MS and LC-MS-Based Untargeted Metabolomics Reveals Diverse Metabolites in Fermented Pine Needles

    Yinyu Xu1, Zheng Li1, Qian Wen2, Hao He1, Pengtu Shi1, Wenhua Zhou2,*

    Phyton-International Journal of Experimental Botany, Vol.93, No.9, pp. 2367-2382, 2024, DOI:10.32604/phyton.2024.047949 - 30 September 2024

    Abstract The diversity of metabolites produced in fermented pine needles at different stages of fermentation has rarely been investigated. In the present study, untargeted metabolomic analysis using GC-MS and LC-MS was performed to detect metabolites in fermented pine needles at different fermentation stages. A total of 30 samples of pine needles fermented first with yeast (Saccharomyces cerevisiae) and then with a mixed bacterial culture of Lactobacillus fermentum CECT5716 and Bifidobacterium Breve M16V, were used to detect differential metabolites at different stages of fermentation. Pearson’s correlation analysis was used to determine correlations between metabolites and key microbial communities. A… More >

  • Open Access

    ARTICLE

    Metformin promotes anti-tumor immunity in STK11 mutant NSCLC through AXIN1-dependent upregulation of multiple nucleotide metabolites

    ZHIGUO WANG1,2,#, KUNLIN LI2,#, CONGHUA LU2, MINGXIA FENG2, CAIYU LIN2, GUOFANG YIN1, DAN LUO1, WENYI LIU3, KAIYU JIN4, YUANYAO DOU2, DI WU2, JIE ZHENG2, KEJUN ZHANG5, LI LI2,*, XIANMING FAN1,*

    Oncology Research, Vol.32, No.10, pp. 1637-1648, 2024, DOI:10.32604/or.2024.052664 - 18 September 2024

    Abstract Background: Metformin has pleiotropic effects beyond glucose reduction, including tumor inhibition and immune regulation. It enhanced the anti-tumor effects of programmed cell death protein 1 (PD-1) inhibitors in serine/threonine kinase 11 (STK11) mutant non-small cell lung cancer (NSCLC) through an axis inhibition protein 1 (AXIN1)-dependent manner. However, the alterations of tumor metabolism and metabolites upon metformin administration remain unclear. Methods: We performed untargeted metabolomics using liquid chromatography (LC)-mass spectrometry (MS)/MS system and conducted cell experiments to verify the results of bioinformatics analysis. Results: According to the Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway database, most… More > Graphic Abstract

    Metformin promotes anti-tumor immunity in <i>STK11</i> mutant NSCLC through AXIN1-dependent upregulation of multiple nucleotide metabolites

  • Open Access

    REVIEW

    Modulatory role of plant-derived metabolites on host-microbiota interactions: personalized therapeutics outlook

    POOJA YADAV, NAR SINGH CHAUHAN*

    BIOCELL, Vol.48, No.8, pp. 1127-1143, 2024, DOI:10.32604/biocell.2024.051318 - 02 August 2024

    Abstract A diverse array of microbes in and on the human body constitute the microbiota. These micro-residents continuously interact with the human host through the language of metabolites to dictate the host’s physiology in health and illnesses. Any biotic and abiotic component ensuring a balanced host-microbiota interaction are potential microbiome therapeutic agents to overcome human diseases. Plant metabolites are continually being used to treat various illnesses. These metabolites target the host’s metabolic machinery and host-gut microbiota interactions to overcome human diseases. Despite the paramount therapeutic significance of the factors affecting host-microbiota interactions, a comprehensive overview of More > Graphic Abstract

    Modulatory role of plant-derived metabolites on host-microbiota interactions: personalized therapeutics outlook

  • Open Access

    ARTICLE

    Integrative Analysis of Transcriptome and Phenolic Compounds Profile Provides Insights into the Quality of Soursop (Annona muricata L.) Fruit

    Yolotzin Apatzingán Palomino-Hermosillo1, Ángel Elpidio Díaz-Jasso2, Rosendo Balois-Morales1, Verónica Alhelí Ochoa-Jiménez1,3, Pedro Ulises Bautista-Rosales1, Guillermo Berumen-Varela1,*

    Phyton-International Journal of Experimental Botany, Vol.93, No.7, pp. 1717-1732, 2024, DOI:10.32604/phyton.2024.052216 - 30 July 2024

    Abstract Soursop (Annona muricata L.) is a tropical fruit highly valued for its unique flavor, nutritional value, and health-promoting properties. The ripening process of soursop involves complex changes in gene expression and metabolite accumulation, which have been studied using various omics technologies. Transcriptome analysis has provided insights into the regulation of key genes involved in ripening, while metabolic compound analysis has revealed the presence of numerous bioactive compounds with potential health benefits. However, the integration of transcriptome and metabolite compound data has not been extensively explored in soursop. Therefore, in this paper, we present a comprehensive analysis… More >

  • Open Access

    ARTICLE

    Identification of Secondary Metabolites in Tunisian Tilia platyphyllos Scop. Using MALDI-TOF and GC-MS

    Ayda Khadhri1, Mohamed Mendili1, Marwa Bannour-Scharinger1, Eric Masson2, Antonio Pizzi2,*

    Journal of Renewable Materials, Vol.12, No.4, pp. 827-842, 2024, DOI:10.32604/jrm.2024.046950 - 12 June 2024

    Abstract This study is the first to evaluate the phytochemical content and biological properties of Tunisian T. platyphyllos Scop. A total of 23 compounds of essential oils were identified by gas chromatography-mass spectrometry (GC-MS) analysis of bracts and fruit extracts. The results show that oxygenated monoterpenes were the dominant class of essential oils. The phenolic composition was investigated by matrix-assisted laser desorption/ionization-time of flight (MALDI-TOF). The analysis showed that the chemical profiles of the ethanolic extracts of bracts and fruits are substantially similar. The highest polyphenol content was found in the ethanolic extracts of the fruits (7.65… More > Graphic Abstract

    Identification of Secondary Metabolites in Tunisian <i>Tilia platyphyllos</i> Scop. Using MALDI-TOF and GC-MS

  • Open Access

    REVIEW

    A perspective review on the biosynthesis of plant-based secondary metabolites and their application as potent drugs

    JHILAM PRAMANIK1,#, AKASH KUMAR2, SARVESH RUSTAGI3,#, MEHAK KATYAL4, SHEETAL THAKUR5, JUTISHNA BORA6, SUMIRA MALIK6,7,*, ANCHAL TREHAN8, NAYAN TALUKDAR9, PETR SLAMA10,*

    BIOCELL, Vol.48, No.4, pp. 541-557, 2024, DOI:10.32604/biocell.2023.029031 - 09 April 2024

    Abstract Many phytochemicals and their derived metabolites produced by plants are extensively employed in commercial goods, pharmaceutical products as well as in the environmental and medical fields. However, these secondary metabolites obtained from plants are in low amounts, and it is difficult to synthesize them at the industrial level. Despite these challenges, they may be utilized for a variety of medicinal products that are either available in the market or are being researched and tested. Secondary metabolites are complex compounds that exhibit chirality. Further, under controlled conditions with elicitors, desired secondary metabolites may be produced from More > Graphic Abstract

    A perspective review on the biosynthesis of plant-based secondary metabolites and their application as potent drugs

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