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  • Open Access

    ARTICLE

    Identification of M2 macrophage-related genes for establishing a prognostic model in pancreatic cancer: FCGR3A as key gene

    ZHEN WANG1, JUN FU1, SAISAI ZHU1, HAODONG TANG2, KUI SHI1, JIHUA YANG3, MENG WANG3, MENGGE WU1, DUNFENG QI1,*

    Oncology Research, Vol.32, No.12, pp. 1851-1866, 2024, DOI:10.32604/or.2024.055286 - 13 November 2024

    Abstract Background: Pancreatic ductal adenocarcinoma (PDAC) has a rich and complex tumor immune microenvironment (TIME). M2 macrophages are among the most extensively infiltrated immune cells in the TIME and are necessary for the growth and migration of cancers. However, the mechanisms and targets mediating M2 macrophage infiltration in pancreatic cancer remain elusive. Methods: The M2 macrophage infiltration score of patients was assessed using the xCell algorithm. Using weighted gene co-expression network analysis (WGCNA), module genes associated with M2 macrophages were identified, and a predictive model was designed. The variations in immunological cell patterns, cancer mutations, and… More > Graphic Abstract

    Identification of M2 macrophage-related genes for establishing a prognostic model in pancreatic cancer: <i>FCGR3A</i> as key gene

  • Open Access

    ARTICLE

    Identification and Transcriptional Regulation of CAMTA Genes in Liriodendron chinense

    Kaiyue Hong, Yasmina Radani, Teja Manda, Jinhui Chen, Liming Yang*

    Phyton-International Journal of Experimental Botany, Vol.93, No.3, pp. 413-425, 2024, DOI:10.32604/phyton.2024.047739 - 28 March 2024

    Abstract This study explores CAMTA genes in the rare and endangered Chinese plant species, Liriodendron chinense. Despite the completion of whole-genome sequencing, the roles of CAMTA genes in calcium regulation and stress responses in this species remain largely unexplored. Within the L. chinense genome, we identified two CAMTA genes, Lchi09764 and Lchi222536, characterized by four functional domains: CG-1, TIG, ANK repeats, and IQ motifs. Our analyses, including phylogenetic investigations, cis-regulatory element analyses, and chromosomal location studies, aim to elucidate the defining features of CAMTA genes in L. chinense. Applying Weighted Gene Co-Expression Network Analysis (WGCNA), we explored the impact of CAMTA genes on More >

  • Open Access

    ARTICLE

    BCCLR: A Skeleton-Based Action Recognition with Graph Convolutional Network Combining Behavior Dependence and Context Clues

    Yunhe Wang1, Yuxin Xia2, Shuai Liu2,*

    CMC-Computers, Materials & Continua, Vol.78, No.3, pp. 4489-4507, 2024, DOI:10.32604/cmc.2024.048813 - 26 March 2024

    Abstract In recent years, skeleton-based action recognition has made great achievements in Computer Vision. A graph convolutional network (GCN) is effective for action recognition, modelling the human skeleton as a spatio-temporal graph. Most GCNs define the graph topology by physical relations of the human joints. However, this predefined graph ignores the spatial relationship between non-adjacent joint pairs in special actions and the behavior dependence between joint pairs, resulting in a low recognition rate for specific actions with implicit correlation between joint pairs. In addition, existing methods ignore the trend correlation between adjacent frames within an action… More >

  • Open Access

    ARTICLE

    IndRT-GCNets: Knowledge Reasoning with Independent Recurrent Temporal Graph Convolutional Representations

    Yajing Ma1,2,3, Gulila Altenbek1,2,3,*, Yingxia Yu1

    CMC-Computers, Materials & Continua, Vol.78, No.1, pp. 695-712, 2024, DOI:10.32604/cmc.2023.045486 - 30 January 2024

    Abstract Due to the structural dependencies among concurrent events in the knowledge graph and the substantial amount of sequential correlation information carried by temporally adjacent events, we propose an Independent Recurrent Temporal Graph Convolution Networks (IndRT-GCNets) framework to efficiently and accurately capture event attribute information. The framework models the knowledge graph sequences to learn the evolutionary representations of entities and relations within each period. Firstly, by utilizing the temporal graph convolution module in the evolutionary representation unit, the framework captures the structural dependency relationships within the knowledge graph in each period. Meanwhile, to achieve better event… More >

  • Open Access

    ARTICLE

    Identification of tumor-suppressor genes in lung squamous cell carcinoma through integrated bioinformatics analyses

    HENG LI1,#, YOUMING LEI3,#, GAOFENG LI1, YUNCHAO HUANG2,*

    Oncology Research, Vol.32, No.1, pp. 187-197, 2024, DOI:10.32604/or.2023.030656 - 15 November 2023

    Abstract Lung cancer is a prevalent malignancy, and fatalities of the disease exceed 400,000 cases worldwide. Lung squamous cell carcinoma (LUSC) has been recognized as the most common pathological form of lung cancer. The comprehensive understanding of molecular features related to LUSC progression has great significance in LUSC prognosis assessment and clinical management. In this study, we aim to identify a panel of signature genes closely associated with LUSC, which can provide novel insights into the progression of LUSC. Gene expression profiles were retrieved from public resources including gene expression omnibus (GEO) and the cancer genome… More >

  • Open Access

    ARTICLE

    DFE-GCN: Dual Feature Enhanced Graph Convolutional Network for Controversy Detection

    Chengfei Hua1,2,3, Wenzhong Yang2,3,*, Liejun Wang2,3, Fuyuan Wei2,3, KeZiErBieKe HaiLaTi2,3, Yuanyuan Liao2,3

    CMC-Computers, Materials & Continua, Vol.77, No.1, pp. 893-909, 2023, DOI:10.32604/cmc.2023.040862 - 31 October 2023

    Abstract With the development of social media and the prevalence of mobile devices, an increasing number of people tend to use social media platforms to express their opinions and attitudes, leading to many online controversies. These online controversies can severely threaten social stability, making automatic detection of controversies particularly necessary. Most controversy detection methods currently focus on mining features from text semantics and propagation structures. However, these methods have two drawbacks: 1) limited ability to capture structural features and failure to learn deeper structural features, and 2) neglecting the influence of topic information and ineffective utilization… More >

  • Open Access

    ARTICLE

    A Spatio-Temporal Heterogeneity Data Accuracy Detection Method Fused by GCN and TCN

    Tao Liu1, Kejia Zhang1,*, Jingsong Yin1, Yan Zhang1, Zihao Mu1, Chunsheng Li1, Yanan Hu2

    Computer Systems Science and Engineering, Vol.47, No.2, pp. 2563-2582, 2023, DOI:10.32604/csse.2023.041228 - 28 July 2023

    Abstract Spatio-temporal heterogeneous data is the database for decision-making in many fields, and checking its accuracy can provide data support for making decisions. Due to the randomness, complexity, global and local correlation of spatiotemporal heterogeneous data in the temporal and spatial dimensions, traditional detection methods can not guarantee both detection speed and accuracy. Therefore, this article proposes a method for detecting the accuracy of spatiotemporal heterogeneous data by fusing graph convolution and temporal convolution networks. Firstly, the geographic weighting function is introduced and improved to quantify the degree of association between nodes and calculate the weighted… More >

  • Open Access

    ARTICLE

    Building Indoor Dangerous Behavior Recognition Based on LSTM-GCN with Attention Mechanism

    Qingyue Zhao1, Qiaoyu Gu2, Zhijun Gao3,*, Shipian Shao1, Xinyuan Zhang1

    CMES-Computer Modeling in Engineering & Sciences, Vol.137, No.2, pp. 1773-1788, 2023, DOI:10.32604/cmes.2023.027500 - 26 June 2023

    Abstract Building indoor dangerous behavior recognition is a specific application in the field of abnormal human recognition. A human dangerous behavior recognition method based on LSTM-GCN with attention mechanism (GLA) model was proposed aiming at the problem that the existing human skeleton-based action recognition methods cannot fully extract the temporal and spatial features. The network connects GCN and LSTM network in series, and inputs the skeleton sequence extracted by GCN that contains spatial information into the LSTM layer for time sequence feature extraction, which fully excavates the temporal and spatial features of the skeleton sequence. Finally, More >

  • Open Access

    ARTICLE

    Exploring the attenuation mechanisms of Dalbergia odorifera leaves extract on cerebral ischemia-reperfusion based on weighted gene co-expression network analysis

    JINFANG HU1,#, JIANGEN AO2,#, LONGSHENG FU1,#, YAOQI WU1, FENG SHAO3, TIANTIAN XU1, MINGJIN JIANG4, SHAOFENG XIONG1, YANNI LV1,*

    BIOCELL, Vol.47, No.7, pp. 1611-1622, 2023, DOI:10.32604/biocell.2023.028684 - 21 June 2023

    Abstract Background: The attenuation function of Dalbergia odorifera leaves on cerebral ischemia-reperfusion (I/R) is little known. The candidate targets for the Chinese herb were extracted from brain tissues through the high-affinity chromatography. The molecular mechanism of D. odorifera leaves on cerebral I/R was investigated. Methods: Serial affinity chromatography based on D. odorifera leaves extract (DLE) affinity matrices were applied to find specific binding proteins in the brain tissues implemented on C57BL/6 mice by intraluminal middle cerebral artery occlusion for 1 h and reperfusion for 24 h. Specific binding proteins were subjected to mass-spectrometry to search for the differentially expressed… More >

  • Open Access

    ARTICLE

    Anomaly Detection for Cloud Systems with Dynamic Spatiotemporal Learning

    Mingguang Yu1,2, Xia Zhang1,2,*

    Intelligent Automation & Soft Computing, Vol.37, No.2, pp. 1787-1806, 2023, DOI:10.32604/iasc.2023.038798 - 21 June 2023

    Abstract As cloud system architectures evolve continuously, the interactions among distributed components in various roles become increasingly complex. This complexity makes it difficult to detect anomalies in cloud systems. The system status can no longer be determined through individual key performance indicators (KPIs) but through joint judgments based on synergistic relationships among distributed components. Furthermore, anomalies in modern cloud systems are usually not sudden crashes but rather gradual, chronic, localized failures or quality degradations in a weakly available state. Therefore, accurately modeling cloud systems and mining the hidden system state is crucial. To address this challenge,… More >

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