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  • Open Access

    ARTICLE

    Identification of M2 macrophage-related genes for establishing a prognostic model in pancreatic cancer: FCGR3A as key gene

    ZHEN WANG1, JUN FU1, SAISAI ZHU1, HAODONG TANG2, KUI SHI1, JIHUA YANG3, MENG WANG3, MENGGE WU1, DUNFENG QI1,*

    Oncology Research, Vol.32, No.12, pp. 1851-1866, 2024, DOI:10.32604/or.2024.055286 - 13 November 2024

    Abstract Background: Pancreatic ductal adenocarcinoma (PDAC) has a rich and complex tumor immune microenvironment (TIME). M2 macrophages are among the most extensively infiltrated immune cells in the TIME and are necessary for the growth and migration of cancers. However, the mechanisms and targets mediating M2 macrophage infiltration in pancreatic cancer remain elusive. Methods: The M2 macrophage infiltration score of patients was assessed using the xCell algorithm. Using weighted gene co-expression network analysis (WGCNA), module genes associated with M2 macrophages were identified, and a predictive model was designed. The variations in immunological cell patterns, cancer mutations, and… More > Graphic Abstract

    Identification of M2 macrophage-related genes for establishing a prognostic model in pancreatic cancer: <i>FCGR3A</i> as key gene

  • Open Access

    ARTICLE

    Integrated GC-MS and LC-MS-Based Untargeted Metabolomics Reveals Diverse Metabolites in Fermented Pine Needles

    Yinyu Xu1, Zheng Li1, Qian Wen2, Hao He1, Pengtu Shi1, Wenhua Zhou2,*

    Phyton-International Journal of Experimental Botany, Vol.93, No.9, pp. 2367-2382, 2024, DOI:10.32604/phyton.2024.047949 - 30 September 2024

    Abstract The diversity of metabolites produced in fermented pine needles at different stages of fermentation has rarely been investigated. In the present study, untargeted metabolomic analysis using GC-MS and LC-MS was performed to detect metabolites in fermented pine needles at different fermentation stages. A total of 30 samples of pine needles fermented first with yeast (Saccharomyces cerevisiae) and then with a mixed bacterial culture of Lactobacillus fermentum CECT5716 and Bifidobacterium Breve M16V, were used to detect differential metabolites at different stages of fermentation. Pearson’s correlation analysis was used to determine correlations between metabolites and key microbial communities. A… More >

  • Open Access

    ARTICLE

    Genome-Wide Identification of ABCC Gene Subfamily Members and Functional Analysis of CsABCC11 in Camellia sinensis

    Mingyuan Luo1, Shiyu Tian1, Xinzhuan Yao2, Yue Wan4, Zhouzhuoer Chen1, Zifan Yang4, Huagen Hao4, Fei Liu3, Hu Tang1,2,*, Litang Lu1,2,*

    Phyton-International Journal of Experimental Botany, Vol.93, No.8, pp. 2019-2036, 2024, DOI:10.32604/phyton.2024.052938 - 30 August 2024

    Abstract The ATP-binding cassette (ABC) transporter is a gene superfamily in plants. ATP-binding cassette subfamily C (ABCC) protein is a multidrug resistance-associated (MRP) transporter. They play various roles in plant growth, development, and secondary metabolite transport. However, there are few studies on ABCC transporters in tea plants. In this study, genome-wide association study (GWAS) analysis of epigallocatechin gallate (EGCG) content in 108 strains of Kingbird revealed that CsABCCs may be involved in EGCG transport. We identified 25 CsABCC genes at the genomic level of the tea plant, their phylogenetic tree, gene structure, targeted miRNA and other bioinformatics… More >

  • Open Access

    ARTICLE

    Efficiency-Driven Custom Chatbot Development: Unleashing LangChain, RAG, and Performance-Optimized LLM Fusion

    S. Vidivelli*, Manikandan Ramachandran*, A. Dharunbalaji

    CMC-Computers, Materials & Continua, Vol.80, No.2, pp. 2423-2442, 2024, DOI:10.32604/cmc.2024.054360 - 15 August 2024

    Abstract This exploration acquaints a momentous methodology with custom chatbot improvement that focuses on proficiency close by viability. We accomplish this by joining three key innovations: LangChain, Retrieval Augmented Generation (RAG), and enormous language models (LLMs) tweaked with execution proficient strategies like LoRA and QLoRA. LangChain takes into consideration fastidious fitting of chatbots to explicit purposes, guaranteeing engaged and important collaborations with clients. RAG’s web scratching capacities engage these chatbots to get to a tremendous store of data, empowering them to give exhaustive and enlightening reactions to requests. This recovered data is then decisively woven into… More >

  • Open Access

    ARTICLE

    GCAGA: A Gini Coefficient-Based Optimization Strategy for Computation Offloading in Multi-User-Multi-Edge MEC System

    Junqing Bai1, Qiuchao Dai1,*, Yingying Li2

    CMC-Computers, Materials & Continua, Vol.79, No.3, pp. 5083-5103, 2024, DOI:10.32604/cmc.2024.050921 - 20 June 2024

    Abstract To support the explosive growth of Information and Communications Technology (ICT), Mobile Edge Computing (MEC) provides users with low latency and high bandwidth service by offloading computational tasks to the network’s edge. However, resource-constrained mobile devices still suffer from a capacity mismatch when faced with latency-sensitive and compute-intensive emerging applications. To address the difficulty of running computationally intensive applications on resource-constrained clients, a model of the computation offloading problem in a network consisting of multiple mobile users and edge cloud servers is studied in this paper. Then a user benefit function EoU (Experience of Users) is… More >

  • Open Access

    ARTICLE

    Identification of Secondary Metabolites in Tunisian Tilia platyphyllos Scop. Using MALDI-TOF and GC-MS

    Ayda Khadhri1, Mohamed Mendili1, Marwa Bannour-Scharinger1, Eric Masson2, Antonio Pizzi2,*

    Journal of Renewable Materials, Vol.12, No.4, pp. 827-842, 2024, DOI:10.32604/jrm.2024.046950 - 12 June 2024

    Abstract This study is the first to evaluate the phytochemical content and biological properties of Tunisian T. platyphyllos Scop. A total of 23 compounds of essential oils were identified by gas chromatography-mass spectrometry (GC-MS) analysis of bracts and fruit extracts. The results show that oxygenated monoterpenes were the dominant class of essential oils. The phenolic composition was investigated by matrix-assisted laser desorption/ionization-time of flight (MALDI-TOF). The analysis showed that the chemical profiles of the ethanolic extracts of bracts and fruits are substantially similar. The highest polyphenol content was found in the ethanolic extracts of the fruits (7.65… More > Graphic Abstract

    Identification of Secondary Metabolites in Tunisian <i>Tilia platyphyllos</i> Scop. Using MALDI-TOF and GC-MS

  • Open Access

    ARTICLE

    Identification and Transcriptional Regulation of CAMTA Genes in Liriodendron chinense

    Kaiyue Hong, Yasmina Radani, Teja Manda, Jinhui Chen, Liming Yang*

    Phyton-International Journal of Experimental Botany, Vol.93, No.3, pp. 413-425, 2024, DOI:10.32604/phyton.2024.047739 - 28 March 2024

    Abstract This study explores CAMTA genes in the rare and endangered Chinese plant species, Liriodendron chinense. Despite the completion of whole-genome sequencing, the roles of CAMTA genes in calcium regulation and stress responses in this species remain largely unexplored. Within the L. chinense genome, we identified two CAMTA genes, Lchi09764 and Lchi222536, characterized by four functional domains: CG-1, TIG, ANK repeats, and IQ motifs. Our analyses, including phylogenetic investigations, cis-regulatory element analyses, and chromosomal location studies, aim to elucidate the defining features of CAMTA genes in L. chinense. Applying Weighted Gene Co-Expression Network Analysis (WGCNA), we explored the impact of CAMTA genes on More >

  • Open Access

    ARTICLE

    BCCLR: A Skeleton-Based Action Recognition with Graph Convolutional Network Combining Behavior Dependence and Context Clues

    Yunhe Wang1, Yuxin Xia2, Shuai Liu2,*

    CMC-Computers, Materials & Continua, Vol.78, No.3, pp. 4489-4507, 2024, DOI:10.32604/cmc.2024.048813 - 26 March 2024

    Abstract In recent years, skeleton-based action recognition has made great achievements in Computer Vision. A graph convolutional network (GCN) is effective for action recognition, modelling the human skeleton as a spatio-temporal graph. Most GCNs define the graph topology by physical relations of the human joints. However, this predefined graph ignores the spatial relationship between non-adjacent joint pairs in special actions and the behavior dependence between joint pairs, resulting in a low recognition rate for specific actions with implicit correlation between joint pairs. In addition, existing methods ignore the trend correlation between adjacent frames within an action… More >

  • Open Access

    ARTICLE

    DGConv: A Novel Convolutional Neural Network Approach for Weld Seam Depth Image Detection

    Pengchao Li1,2,3,*, Fang Xu1,2,3,4, Jintao Wang1,2, Haibing Guo4, Mingmin Liu4, Zhenjun Du4

    CMC-Computers, Materials & Continua, Vol.78, No.2, pp. 1755-1771, 2024, DOI:10.32604/cmc.2023.047057 - 27 February 2024

    Abstract We propose a novel image segmentation algorithm to tackle the challenge of limited recognition and segmentation performance in identifying welding seam images during robotic intelligent operations. Initially, to enhance the capability of deep neural networks in extracting geometric attributes from depth images, we developed a novel deep geometric convolution operator (DGConv). DGConv is utilized to construct a deep local geometric feature extraction module, facilitating a more comprehensive exploration of the intrinsic geometric information within depth images. Secondly, we integrate the newly proposed deep geometric feature module with the Fully Convolutional Network (FCN8) to establish a… More >

  • Open Access

    ARTICLE

    IndRT-GCNets: Knowledge Reasoning with Independent Recurrent Temporal Graph Convolutional Representations

    Yajing Ma1,2,3, Gulila Altenbek1,2,3,*, Yingxia Yu1

    CMC-Computers, Materials & Continua, Vol.78, No.1, pp. 695-712, 2024, DOI:10.32604/cmc.2023.045486 - 30 January 2024

    Abstract Due to the structural dependencies among concurrent events in the knowledge graph and the substantial amount of sequential correlation information carried by temporally adjacent events, we propose an Independent Recurrent Temporal Graph Convolution Networks (IndRT-GCNets) framework to efficiently and accurately capture event attribute information. The framework models the knowledge graph sequences to learn the evolutionary representations of entities and relations within each period. Firstly, by utilizing the temporal graph convolution module in the evolutionary representation unit, the framework captures the structural dependency relationships within the knowledge graph in each period. Meanwhile, to achieve better event… More >

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