Abdulrahman K. Sinno¹, Aisha Mustapha¹, Navya Nair¹, Simona Zaami², Lina De Paola², Valentina Billone³, Eleonora Conti³, Giuseppe Gullo^3,*, Pasquale Patrizio⁴

Oncology Research, Vol.34, No.1, 2026, DOI:10.32604/or.2025.072176 - 30 December 2025

Abstract Cervical cancer related to human papillomavirus (HPV) is a leading cause of cancer-related mortality among women worldwide. Cancer cells release fragments of their DNA, known as circulating tumor DNA (ctDNA), which can be detected in bodily fluids. A PubMed search using the terms “ctHPV” or “circulating tumor DNA” and “cervical cancer”, limited to the past ten years, identified 104 articles, complemented by hand-searching for literature addressing medico-legal implications. Studies were evaluated for relevance and methodological quality. Detection and characterization of circulating tumor HPV DNA (ctHPV DNA) have emerged as promising tools for assessing prognosis and More >

Sarab Almuhaideb^1,*, Najwa Altwaijry¹, Isra Al-Turaiki¹, Ahmad Raza Khan², Hamza Ali Rizvi³

CMC-Computers, Materials & Continua, Vol.85, No.2, pp. 3095-3128, 2025, DOI:10.32604/cmc.2025.067390 - 23 September 2025

Abstract Many bioinformatics applications require determining the class of a newly sequenced Deoxyribonucleic acid (DNA) sequence, making DNA sequence classification an integral step in performing bioinformatics analysis, where large biomedical datasets are transformed into valuable knowledge. Existing methods rely on a feature extraction step and suffer from high computational time requirements. In contrast, newer approaches leveraging deep learning have shown significant promise in enhancing accuracy and efficiency. In this paper, we investigate the performance of various deep learning architectures: Convolutional Neural Network (CNN), CNN-Long Short-Term Memory (CNN-LSTM), CNN-Bidirectional Long Short-Term Memory (CNN-BiLSTM), Residual Network (ResNet), and… More >

Xinxin Hu^1,2,#, Yuye Xue^3,#, Fei Fang⁴, Jie Li², Xiaofeng Yuan², Guang Cheng⁵, Hailong Yuan³, Yongqiang Zhang², Yuefei Zhou⁵, Shuangwu Yang⁵, Pengcheng Qiu^2,*, Yunyang Lu², Haifeng Tang^2,*

Oncology Research, Vol.33, No.9, pp. 2491-2506, 2025, DOI:10.32604/or.2025.064454 - 28 August 2025

Abstract Objectives: The Sorbin and SH3 domain containing 1 (SORBS1), a protein linked to insulin signaling CBL interaction, was investigated for its role in pancreatic cancer apoptosis. This study explored polyphyllin H (PPH)’s ability to restore SORBS1-knockdown-mediated repair functions. Methods: PANC-1 cells were divided into Blank, overexpression (OE), and knockdown groups. CCK-8 assays assessed proliferation and drug toxicity. Western blot and flow cytometry analyzed SORBS1 levels and PPH effects. Comet assays quantified DNA damage. Subcutaneous xenograft tumors in nude mice (Blank vs. knockdown) were treated with PPH to evaluate in vivo efficacy. SORBS1-H2AX gene correlation was analyzed… More > Graphic Abstract

JONG-HYUK AHN¹, JIN WOOK YI^2,3,*

Oncology Research, Vol.33, No.8, pp. 1909-1931, 2025, DOI:10.32604/or.2025.065847 - 18 July 2025

Abstract Background: With growing interest in space exploration, understanding microgravity’s impact on human health is essential. This study aims to investigate gene expression changes and migration and invasion potential in five thyroid-related cell lines cultured under simulated microgravity. Methods: Five thyroid-related cell lines—normal thyrocytes (Nthy-ori 3-1), papillary thyroid cancer (PTC) cells (SNU-790, TPC-1), poorly differentiated thyroid cancer cell (BCPAP), and anaplastic thyroid cancer cell (SNU-80)—were cultured under simulated microgravity (10⁻³ g) using a clinostat. Differentially expressed genes (DEGs) were analyzed using cDNA microarray, followed by functional annotation and assessment of aggressiveness via Transwell migration and invasion assays.… More >

Wenfei Luo^1,#, Dingming Song^2,#, Yibo He³, Judong Song^4,*, Yunzhen Ding^5,*

Oncology Research, Vol.33, No.8, pp. 1875-1893, 2025, DOI:10.32604/or.2025.063843 - 18 July 2025

Abstract Malignant melanoma, characterized by its high metastatic potential and resistance to conventional therapies, presents a major challenge in oncology. This review explores the current status and advancements in tumor vaccines for melanoma, focusing on peptide, DNA/RNA, dendritic cell, tumor cell, and neoantigen-based vaccines. Despite promising results, significant challenges remain, including the immunosuppressive tumor microenvironment, patient heterogeneity, and the need for more effective antigen presentation. Recent strategies, such as combining vaccines with immune checkpoint inhibitors (ICIs), aim to counteract immune evasion and enhance T cell responses. Emerging approaches, including personalized neoantigen vaccines and the use of More > Graphic Abstract

Isra Mohammed¹, Mohamed Elhafiz M. Musa², Murtada K. Elbashir^3,*, Ayman Mohamed Mostafa³, Amin Ibrahim Adam⁴, Mahmood A. Mahmood³, Areeg S. Faggad⁵

CMC-Computers, Materials & Continua, Vol.84, No.2, pp. 3749-3763, 2025, DOI:10.32604/cmc.2025.063880 - 03 July 2025

Abstract Sonic Hedgehog Medulloblastoma (SHH-MB) is one of the four primary molecular subgroups of Medulloblastoma. It is estimated to be responsible for nearly one-third of all MB cases. Using transcriptomic and DNA methylation profiling techniques, new developments in this field determined four molecular subtypes for SHH-MB. SHH-MB subtypes show distinct DNA methylation patterns that allow their discrimination from overlapping subtypes and predict clinical outcomes. Class overlapping occurs when two or more classes share common features, making it difficult to distinguish them as separate. Using the DNA methylation dataset, a novel classification technique is presented to address… More >

RAQUEL GÓMEZ-MOLINA^1,*, RAQUEL MARTÍNEZ^2,3,4, MIGUEL SUÁREZ^2,3,4,*, ANA PEÑA-CABIA¹, MARíA CONCEPCIóN CALDERÓN¹, JORGE MATEO^3,4

Oncology Research, Vol.33, No.7, pp. 1531-1545, 2025, DOI:10.32604/or.2025.063951 - 26 June 2025

Abstract Lynch syndrome (LS), also known as hereditary non-polyposis colorectal cancer (HNPCC), is an inherited condition associated with a higher risk of colorectal cancer (CRC) and other cancers. It is caused by germline mutations in DNA mismatch repair (MMR) genes, including MLH1, MSH2, MSH6 and PMS2. These mutations lead to microsatellite instability (MSI) and defective DNA repair mechanisms, resulting in increased cancer risk. Early detection of LS is crucial for effective management and cancer prevention. Endoscopic surveillance, particularly regular colonoscopy, is recommended for individuals with LS to detect CRC at early stages. Additionally, universal screening of CRC for More > Graphic Abstract

ARTEM P. GUREEV¹, IRINA S. SADOVNIKOVA¹, EKATERINA V. CHERNYSHOVA¹, EKATERINA P. KRUTSKIKH¹, IRINA B. PEVZNER², LJUBAVA D. ZOROVA², VERONIKA V. NESTEROVA¹, POLINA I. BABENKOVA¹, EGOR Y. PLOTNIKOV^2,*

BIOCELL, Vol.49, No.5, pp. 873-892, 2025, DOI:10.32604/biocell.2025.063557 - 27 May 2025

Abstract Background: Mitochondrial dysfunction plays a critical role in the pathogenesis of Alzheimer’s disease (AD). Resveratrol is a promising compound for the treatment of various neurodegenerative diseases, including AD. Aims: To investigate mitochondrial damage and the effects of resveratrol on inflammation, cognitive function, and mitochondrial quality control in APP/PS1 mice. Methods: Comparative analysis of mitochondrial DNA (mtDNA) damage was conducted between 10-month-old APP/PS1 mice and age-matched C57BL/6 mice. Assessments included measurement of amyloid-β levels, inflammatory markers, swimming distance in the Morris water maze, and gut microbiome composition. Resveratrol’s effects on cytokine expression, mtDNA levels in plasma, and… More >

Jae Hyeong Kim¹, Yuna Youn¹, Jin-Hyeok Hwang^1,2,*

BIOCELL, Vol.49, No.4, pp. 681-700, 2025, DOI:10.32604/biocell.2025.062144 - 30 April 2025

Abstract Objectives: SLFN11 (Schlafen-11) enhances sensitivity to DNA-damaging agents (DDAs) and DNA damage response (DDR) inhibitors in various cancer types. However, its function in pancreatic cancer (PC) remains largely unknown. This research aims to investigate the expression patterns of SLFN11 and other SLFN family members in PC and their correlation with drug sensitivity. Methods: SLFN11 expression and genetic alterations were analyzed using publicly available datasets (TCGA and GTEx). Functional studies, including cell cycle, apoptosis assays, and proliferation assays, were performed in SLFN11-knockdown and SLFN11-knockout (KO) PC cells. The relationship between SLFN11 expression and drug responsiveness was assessed via the CellMiner… More >

Mohamed Medani¹, Yahia Said², Nashwan Adnan Othman^3,4, Farrukh Yuldashev⁵, Mohamed Kchaou⁶, Faisal Khaled Aldawood⁶, Bacha Rehman^7,*

CMES-Computer Modeling in Engineering & Sciences, Vol.143, No.1, pp. 1049-1070, 2025, DOI:10.32604/cmes.2025.063405 - 11 April 2025

Abstract Satellite images are widely used for remote sensing and defence applications, however, they are subject to a variety of threats. To ensure the security and privacy of these images, they must be watermarked and encrypted before communication. Therefore, this paper proposes a novel watermarked satellite image encryption scheme based on chaos, Deoxyribonucleic Acid (DNA) sequence, and hash algorithm. The watermark image, DNA sequence, and plaintext image are passed through the Secure Hash Algorithm (SHA-512) to compute the initial condition (keys) for the Tangent-Delay Ellipse Reflecting Cavity Map (TD-ERCS), Henon, and Duffing chaotic maps, respectively. Through More >