Wenshu Zhuang^1,#, Guangyang Jin^1,#, Yiting Zou¹, Zhong Bian¹, Dong Xie¹, Shuwei Zhang¹, Hadi Yeilaghi¹, Liangliang Yu³, Muiyun Wong⁴, Xiaolei Fan^1,2, Dongsheng Zhao^1,2, Qiaoquan Liu^1,2, Lin Zhang^1,2,*

Phyton-International Journal of Experimental Botany, DOI:10.32604/phyton.2024.054649

Abstract Panicle size is one of the important factors in shaping yield potential in rice, but it shows plasticity in different environments, which leads to yield fluctuation. Variations in panicle size among varieties are largely determined by quantitative trait loci (QTLs). QTL analysis could elaborate on the environmental impact on trait plasticity using nearly isogenic lines (NILs) of different QTLs. Two QTLs, ipa1-2D and qPL6 are identified to have pleiotropic contributions to panicle size and plant architecture, but their responses to different growth conditions are still unclear. In this study, we developed NILs harboring a single locus… More >

Zhenbing Qiao^1,2, Mengyun Chen^1,2, Wenjun Ma^1,2, Juan Zhao^1,2, Jiaju Zhu^1,2, Kaikai Zhu^1,2, Pengpeng Tan^1,2, Fangren Peng^1,2,*

Phyton-International Journal of Experimental Botany, DOI:10.32604/phyton.2024.056655

Abstract Ammonium nitrogen (NH₄⁺-N) is one of the main forms of nitrogen absorbed and utilized by plants, and mastering the regulatory mechanism of plant ammonium assimilation is a key way to improve the efficiency of plant nitrogen utilization. Glutamine synthetase (GS) and glutamate synthase (GOGAT), two key enzymes for ammonium assimilation, have rarely been studied in pecan. In this study, GS and GOGAT family members of pecan were identified and analyzed using bioinformatics methods. The results indicated that 6 GS and 4 GOGAT genes were identified. The cis-acting elements can be broadly categorized into light-responsive, hormone-responsive, and stress-responsive elements.… More >

Jun Yuan¹, Rongpeng Liu⁴, Xiaoyun Wang^3,*, Haihui Fu^2,*

Phyton-International Journal of Experimental Botany, DOI:10.32604/phyton.2024.055338

Abstract Cadmium (Cd) has seriously affected the quality of traditional Chinese medicinal material Salvia miltiorrhiza in recent years, threatening human health. The physiological and metabolic profiles of S. miltiorrhiza in response to Cd stress have been revealed in previous studies. However, transcriptional and post-transcriptional regulation in response to different degrees of Cd (0, 25, 50, and 100 mg/kg) stress in S. miltiorrhiza remains unclear. Here, transcriptome atlas in S. miltiorrhiza under different degrees of Cd Stress was unveiled using RNA sequencing (RNA-seq). These results showed that the profiles of gene expression were different in the response to Cd treatment. Defense More >

Fatima-Ezzahra Soussani^1,2,3, Youssef Ait Rahou^1,2,4, Chayma Ikan^1,2, Allal Douira³, Rachid Benkirane³, Essaid Ait Barka⁵, Rachid Lahlali^6,*, Abdelilah Meddich^1,2,7,*

Phyton-International Journal of Experimental Botany, DOI:10.32604/phyton.2024.055050

Abstract This study assesses the effectiveness of using arbuscular mycorrhizal fungi (M) and compost applied alone or in combination (vs. conventional chemical fertilizer application (NPK)) on tomato resistance to vascular wilt caused by Verticillium dahliae. In this study, ten treatments were applied: (1) Control (2) M: Rhizophagus irregularis (3) C: Compost (4) MC: The combination of M and compost (5) NPK: conventional chemical fertilizer (6) V: plants infected with V. dahliae (7) MV: plants infected with a conidial suspension of V. dahliae and M, (8) CV: The combination of compost and V. dahliae, (9) MCV: The combination of M, compost and V. dahliae,… More >

Dongxue Su¹, Jiarui Zheng¹, Yuwei Yi¹, Shuyuan Zhang¹, Luxin Feng¹, Danzeng Quzhen², De Qiong³, Weiwei Zhang¹, Qijian Wang¹, Feng Xu^1,*

Phyton-International Journal of Experimental Botany, DOI:10.32604/phyton.2024.055350

Abstract The multifaceted roles of MYB transcriptional regulators are pivotal in orchestrating the complex processes of secondary metabolism, stress tolerance mechanisms, and life cycle progression and development. This study extensively examined the JrMYB genes using whole genome and transcriptomic data, focusing on identifying putative MYB genes associated with fatty acid metabolism. 126 MYB genes were identified within the walnut genome, characterized by hydrophilic proteins spanning lengths ranging from 78 to 1890 base pairs. Analysis of cis-acting elements within the promoter regions of MYB genes revealed many elements linked to cell development, environmental stress, and phytohormones. Transcriptomic data was utilized… More > Graphic Abstract

Mingkun Cheng^1,2, Ju Min^2,*, Yanying Zhang², Yuhe Wang³, Xia Wang⁴, Weiming Shi^1,*

Phyton-International Journal of Experimental Botany, DOI:10.32604/phyton.2024.054182

Abstract Vegetable runoff nitrogen (N) loss is a serious environmental issue. However, whether the volume or N content of runoff determines the final N losses has not been clarified, which limited the optimal N managements in vegetable production. Here, we conducted a simulated rainfall experiment to study the runoff N loss flux pattern and the accumulation rate as well as the main influencing factors. The results showed that at 20 to 30 min, the volume of runoff water with a high N content reaches a critical inflection point of increase. Under 55 mm/h rainfall intensity, the… More >

Yinyu Xu¹, Zheng Li¹, Qian Wen², Hao He¹, Pengtu Shi¹, Wenhua Zhou^2,*

Phyton-International Journal of Experimental Botany, DOI:10.32604/phyton.2024.047949

Abstract The diversity of metabolites produced in fermented pine needles at different stages of fermentation has rarely been investigated. In the present study, untargeted metabolomic analysis using GC-MS and LC-MS was performed to detect metabolites in fermented pine needles at different fermentation stages. A total of 30 samples of pine needles fermented first with yeast (Saccharomyces cerevisiae) and then with a mixed bacterial culture of Lactobacillus fermentum CECT5716 and Bifidobacterium Breve M16V, were used to detect differential metabolites at different stages of fermentation. Pearson’s correlation analysis was used to determine correlations between metabolites and key microbial communities. A… More >

Abdelghafour Doghbage^1,*, Safia Belhadj², Hassen Boukerker³, Jean Philippe Mevy⁴, Thierry Gauquelin⁴, Alain Tonetto⁵, Benbader Habib^1,6, Arezki Derridj⁷, Zahra Robã Bouabdelli¹, Walid Soufan⁸, Fathi Abdellatif Belhouadjeb¹

Phyton-International Journal of Experimental Botany, DOI:10.32604/phyton.2024.055528

Abstract The Atlas pistachio tree is a typically Mediterranean species, which represents an important forest heritage in the arid and semi-arid regions of Algeria. It is deeply rooted in the local population’s culture, making it essential to better understand this species for its conservation and valorization. Through our work on 7 provenances of Pistacia atlantica distributed across different bioclimates in Algeria and based on 28 quantitative and qualitative leaf, trichome, and stomatal traits, it was revealed that the Atlas pistachio tree exhibits significant ecotypic variability linked to its habitat and a high adaptability to extreme conditions in… More >

Jiayu Luo^1,#, Jianfeng Liu^1,#, Zuoxiang Sun¹, Pengpeng Shao¹, Danyang Wang², Jianzhong Yao³, Binzhou Li², Lijun Dong¹, Dandan Cao^1,4,*, Jianrong Wei^1,*

Phyton-International Journal of Experimental Botany, DOI:10.32604/phyton.2024.052858

Abstract Anoplophora glabripennis is one of the most devastating wood-boring beetles that attacks poplars. However, one poplar species, Populus deltoides, has strong resistance to Anoplophora glabripennis infestation, the underlying defense mechanisms against Anoplophora glabripennis are poorly understood. Secondary metabolites play a crucial role in plants to combat biological stress. Here, based on transcriptome and metabolome, we demonstrated that the mechanisms for responses to mechanical damage and insect infestation were different. The degree of reactions to adult groove production, larval incubation, and larval frass production was not identical. In addition, the potential genes with insect resistance activity were identified. Predominant differentially More >

Yurii Hrytsyk¹, Oleh Koshovyi^2,3, Martin Lepiku⁴, Valdas Jakštas⁵, Vaidotas Žvikas⁵, Tetiana Matus¹, Mariia Melnyk¹, Lyubov Grytsyk¹, Ain Raal^2,*

Phyton-International Journal of Experimental Botany, DOI:10.32604/phyton.2024.055117

Abstract Canadian goldenrod (Solidago canadensis L.) is a rhizomatous plant of the Asteraceae family. In folk medicine, Solidago galenic remedies are used for diseases of the kidneys, urinary tract, liver, etc. Externally, goldenrod is used to treat purulent wounds, furunculosis, and gum abscesses as washes and compresses. The aims of this research were to study the yield and chemical composition of essential oil (EO), the anti-inflammatory activity of S. canadensis dry extracts based on its decoction and tincture. In EO (2.8 mL/kg) of S. canadensis were identified and quantified 34 compounds. The principal compounds of the EO from flowering tops… More > Graphic Abstract