Special Issues
Table of Content

Biochemical and Epigenetics Changes in Health and Disease

Submission Deadline: 30 November 2022 (closed) View: 122

Guest Editors


Prof. Dr. Ozge Çevik, Department of Medical Biochemistry, School of Medicine, Aydın Adnan Menderes University, Aydın, Turkey. E-mail: ozge.cevik@adu.edu.tr


Assoc. Prof. Dr. Ismail Sari, Department of Medical Biochemistry, School of Medicine, Nigde Omer Halisdemir University, Nigde, Turkey. E-mail: smlsr@hotmail.com


Asst. Prof. Dr. Erkan Gumus, Department of Histology and Embryology, School of Medicine, Aydın Adnan Menderes University, Aydın, Turkey. E-mail:erkangumus@yahoo.com

Summary

Health is defined as "the harmonious work of thousands of biochemical reactions and processes that occur in normal cells to maintain homeostasis." Disruption of these processes or reactions and/or failure to progress in harmony can lead to diseases. The continuity of health also depends on the unchanged expression of the genes involved in these biochemical transformations and processes, in other words, to remain the same. Although the chemical and molecular structure of DNA is understood, thanks to the findings obtained in the epigenetic field in recent years, it is understood that not everything is dependent on DNA in biological processes and diseases. Epigenetic changes that occur without causing a change in the base sequence in DNA play an essential role in regulating of the expression of a gene. Therefore, it is inevitable that epigenetic changes affect biochemical processes. Thus, epigenetic and biochemical changes are closely interrelated, and thanks to the developments in epigenetics and biochemistry in recent years, we now have more information about developmental biology and pathogenesis of many diseases.

 

The current special issue will focus on Biochemical and Epigenetic changes in development and diseases, therapies, and their relationship. We welcome investigators in relevant fields to contribute research articles, reviews, perspectives, and commentaries, describing recent findings which use advanced molecular biological and biochemical techniques. Potential topics include but are not limited to the followings:

 

-Changes in epigenetic mechanisms in development and disease and their importance

-Researches (especially pathway-based studies) that examine changes in biochemical processes in disease and development

-Studies examining the pathogenesis of diseases based on lipidomics, proteomics, and genomics approaches

-Studies revealing the connection between epigenetic mechanisms and biochemical processes in development and disease

-Studies on therapies used in the treatment of diseases


Keywords

Epigenetics, Biochemical Pathway, Developmental Biology, Lipidomics, Proteomics, Genomics, Biochemical Basis Of Disease, Therapies

Published Papers


  • Open Access

    ARTICLE

    Vitamin D attenuates TGF-β1-induced lung fibroblast proliferation and migration through repression of RasGRP3

    GUANQIONG HU, RISHENG HUANG, LUELUE LU, QINSHI PAN, XIAOXIN CHEN
    BIOCELL, Vol.47, No.6, pp. 1243-1251, 2023, DOI:10.32604/biocell.2023.027763
    (This article belongs to the Special Issue: Biochemical and Epigenetics Changes in Health and Disease)
    Abstract Background: Transforming growth factor-β1 (TGF-β1) is a pleiotropic cytokine that plays a central role in the pathogenesis of idiopathic pulmonary fibrosis (IPF). While previous studies have revealed a cross-talk between vitamin D and TGF-β1 signaling, it is still unclear how they interact with each other to regulate the progression of IPF. Methods: In this work, we searched for a novel mediator of TGF-β1 activity in lung fibroblasts and examined its regulation by vitamin D. In addition, we investigated the mechanism underlying the interaction between vitamin D and TGF-β1 signaling in lung fibroblast activation. Bioinformatic analysis was… More >

  • Open Access

    REVIEW

    Protein-mediated interactions in the dynamic regulation of acute inflammation

    RYAN STARK
    BIOCELL, Vol.47, No.6, pp. 1191-1198, 2023, DOI:10.32604/biocell.2023.027838
    (This article belongs to the Special Issue: Biochemical and Epigenetics Changes in Health and Disease)
    Abstract Protein-mediated interactions are the fundamental mechanism through which cells regulate health and disease. These interactions require physical contact between proteins and their respective targets of interest. These targets include not only other proteins but also nucleic acids and other important molecules as well. These proteins are often involved in multibody complexes that work dynamically to regulate cellular health and function. Various techniques have been adapted to study these important interactions, such as affinity-based assays, mass spectrometry, and fluorescent detection. The application of these techniques has led to a greater understanding of how protein interactions are More >

  • Open Access

    REVIEW

    DNA methylation as a mediator of epigenetic regulation in the pathogenesis and precision medicine of osteoarthritis: An updated review

    QIAO ZHOU, JIAN LIU, LING XIN, YANYAN FANG, LEI WAN, DAN HUANG, JINCHEN GUO, JIANTING WEN
    BIOCELL, Vol.47, No.4, pp. 761-772, 2023, DOI:10.32604/biocell.2023.026698
    (This article belongs to the Special Issue: Biochemical and Epigenetics Changes in Health and Disease)
    Abstract The pathophysiology of osteoarthritis (OA) is multifactorial, with the primary risk factors being obesity, age, environmental variables, and genetic predisposition. The available evidence suggests that genetic diversity does not adequately account for all clinical characteristics and heterogeneity of OA. Genetics has emerged as a nascent and crucial area of research in OA. The epigenetic module presents a potential link between genetic and environmental risk factors and the susceptibility and pathogenesis of OA. As a critical epigenetic alteration, DNA methylation has been shown to have an important role in the etiology of OA and is a More >

  • Open Access

    ARTICLE

    Semaphorin 7A promotes human vascular smooth muscle cell proliferation and migration through the β-catenin signaling pathway

    XIAOSU SONG, FEN GAO, HONG LI, WEIWEI QIN, CHANJUAN CHAI, GUOJUAN SHI, HUIYU YANG
    BIOCELL, Vol.47, No.4, pp. 849-858, 2023, DOI:10.32604/biocell.2023.026545
    (This article belongs to the Special Issue: Biochemical and Epigenetics Changes in Health and Disease)
    Abstract Background: Vascular smooth muscle cells (VSMCs) undergo a conversion from a contractile phenotype to a proliferative synthetic phenotype, contributing to the pathogenesis of cardiovascular diseases. Semaphorin 7A (SEMA7A) is a glycosylphosphatidylinositol-anchored membrane protein that plays an important role in vascular homeostasis by regulating endothelial cell behaviors. However, the expression and role of SEMA7A in VSMCs remain unclear.Methods: In this study, we screened for VSMC-regulating genes in publicly available datasets and analyzed the expression of SEMA7A in human coronary artery smooth muscle cells (hCASMCs) treated with platelet-derived growth factor-BB (PDGF-BB). The effects of SEMA7A overexpression and knockdown… More >

  • Open Access

    REVIEW

    The role of 5′-adenosine monophosphate-activated protein kinase (AMPK) in skeletal muscle atrophy

    KAI DANG, HAFIZ MUHAMMAD UMER FAROOQ, YUAN GAO, XIAONI DENG, AIRONG QIAN
    BIOCELL, Vol.47, No.2, pp. 269-281, 2023, DOI:10.32604/biocell.2023.023766
    (This article belongs to the Special Issue: Biochemical and Epigenetics Changes in Health and Disease)
    Abstract As a key coordinator of metabolism, AMP-activated protein kinase (AMPK) is vitally involved in skeletal muscle maintenance. AMPK exerts its cellular effects through its function as a serine/threonine protein kinase by regulating many downstream targets and plays important roles in the development and growth of skeletal muscle. AMPK is activated by phosphorylation and exerts its function as a kinase in many processes, including synthesis and degradation of proteins, mitochondrial biogenesis, glucose uptake, and fatty acid and cholesterol metabolism. Skeletal muscle atrophy is a result of various diseases or disorders and is characterized by a decrease More >

  • Open Access

    ARTICLE

    Diagnostic and prognostic significance of the lymphocyte/C-reactive protein ratio, neutrophil/lymphocyte ratio, and D-dimer values in patients with COVID-19

    ALPASLAN OZTURK, MEHMET KARA
    BIOCELL, Vol.46, No.12, pp. 2625-2635, 2022, DOI:10.32604/biocell.2022.023124
    (This article belongs to the Special Issue: Biochemical and Epigenetics Changes in Health and Disease)
    Abstract In this study, our aim was to examine the diagnostic and prognostic significance of lymphocyte/C-reactive protein ratio (LCR), neutrophil/lymphocyte ratio (NLR) and D-dimer parameters in COVID-19 infection. The LCR, NLR, neutrophil count, mean platelet volume (MPV), C-reactive protein (CRP), and D-dimer parameters were evaluated retrospectively. This was a retrospective cohort study with 1000 COVID-19 positive and 1000 healthy control groups, all over the age of 18 years. Odds ratio (OR) and 95% confidence interval (CI) values were calculated for each parameter found to be statistically significant in the univariate and multivariate logistic regression models. Herein,… More >

  • Open Access

    ARTICLE

    Hypoxia induced apoptosis of rat gastric mucosal cells by activating autophagy through HIF-1α/TERT/mTORC1 pathway

    YAPING WANG; XIAOHONG XUE; ZHEN ZHAO; XIAOLIN LI; ZHIYONG ZHU
    BIOCELL, Vol.46, No.7, pp. 1651-1659, 2022, DOI:10.32604/biocell.2022.018559
    (This article belongs to the Special Issue: Biochemical and Epigenetics Changes in Health and Disease)
    Abstract The pathogenesis of high altitude-related gastric mucosal injury remains poorly understood, this study aimed to investigate the role of autophagy in hypoxia-induced apoptosis of rat gastric mucosal cells. Rats were randomized into four groups which were maintained at an altitude of 400 m (P) or received no treatment (H), autophagy inducer rapamycin (H+AI) or autophagy inhibitor 3-MA (H+AB) at an altitude of 4,300 m for 1, 7, 14 and 21 days, respectively, and the morphology, ultrastructure, autophagy, and apoptosis of gastric mucosal tissues were examined. Gastric mucosal epithelial cells CC-R039 were cultured under conditions of… More >

  • Open Access

    VIEWPOINT

    Co-regulator NCOA5 and cancer

    YUANYUAN CHEN, SHUAISHUAI CUI, YUNFEI GUO, DAHU CHEN
    BIOCELL, Vol.46, No.7, pp. 1643-1650, 2022, DOI:10.32604/biocell.2022.019142
    (This article belongs to the Special Issue: Biochemical and Epigenetics Changes in Health and Disease)
    Abstract NCOA5 encodes a co-regulator for estrogen receptors (ERα and ERβ), orphan nuclear receptors (REV-ERBα and REV-ERBβ) and liver X receptor. It can influence many cellular processes by either promoting or inhibiting gene expression through its two important functional motifs: LxxLL (co-activator) and ΦxxΦΦ (co-repressor). Many reports have revealed the important roles of NCOA5 in diseases, such as diabetes, reproductive defects and autoimmune disease. In this review, we focus on its function in cancers and summary the current research progresses regarding its different roles in various cancers. More >

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