Computer Modeling in Engineering & Sciences |
DOI: 10.32604/cmes.2021.015159
ARTICLE
The Research of Automatic Classification of Ultrasound Thyroid Nodules
1Institute of Information Science, Beijing Jiaotong University, Beijing, 100044, China
2College of Electronic and Information Engineering, Hebei University, Baoding, 071000, China
3Machine Vision Technology Innovation Center of Hebei Province, Baoding, 071000, China
4Department of Informatics, University of Leicester, Leicester, LE1 7RH, UK
*Corresponding Authors: Shaohai Hu. Email: shhu@bjtu.eud.cn; Jie Zhao. Email: zhaojie_hbu@163.com
Received: 26 November 2020; Accepted: 01 March 2021
Abstract: This paper proposes a computer-aided diagnosis system which can automatically detect thyroid nodules (TNs) and discriminate them as benign or malignant. The system firstly uses variational level set active contour with gradients and phase information to complete automatic extraction of the boundaries of thyroid nodules images. Then according to thyroid ultrasound images and clinical diagnostic criteria, a new feature extraction method based on the fusion of shape, gray and texture is explored. Due to the imbalance of thyroid sample classes, this paper introduces a weight factor to improve support vector machine, offering different classes of samples with different weights. Finally, thyroid nodules are classified and discriminated by the improved support vector machine. Experiments show that the efficiency of discrimination on benign and malignant thyroid nodules is improved.
Keywords: Thyroid nodules; active contour model; feature extraction; image classification
Thyroid nodule is a common disease and timely detection and treatment can prevent it from turning into malignant tumors. The continuously improved accuracy of ultrasound diagnosis of thyroid nodules has made ultrasound diagnosis the preferred laboratory examination of thyroid nodular disease [1,2]. In the process of detecting and assessing disease severity, computer-aided analysis [3,4] improves the readability of medical images and provides a reliable second opinion, which helps doctors to make a more accurate diagnostic decision. Computer-aided diagnosis system has been successfully applied to the analysis of ultrasound images of liver, breast, prostate and other soft tissues of different internal organs. Currently, comparatively fewer researches apply computer-aided analysis to assess thyroid diseases. And early studies on thyroid texture analysis are limited to extracting features from histograms. For example, Iakovidis et al. [5] proposed a fuzzy local binary pattern (FLBP) for ultrasound texture characterization to automatic classification of thyroid nodules. Chang et al. [6] applied support vector machine for feature selection and classification of thyroid nodules in ultrasound images. Morifuji et al. [7] studied whether thyroid nodules are malignant; Acharya et al. [8] combined local binary pattern (LBP) and Gabor transform features for automatic classification of ultrasound thyroid nodules. On one hand, these studies demonstrated the effectiveness of histogram on thyroid tissue feature. On the other hand, the feature-based histogram cannot compile the distribution of the image pixels on space. Thus, for thyroid ultrasound image texture analysis, the new approach combines histogram features with statistical features. These statistical features include Haralick co-occurrence features [9,10], Muzzolini spatial characteristics [11], Radon transform features [12] and LBP features [13]. Most of these methods use histogram, second or even senior statistical texture descriptors to indicate thyroid ultrasound mode. In order to consider the uncertainty caused by the inherent speckle noise of thyroid ultrasound images, Iakovidis et al. [14,15] proposed FLBP algorithm. But the selection of fuzzy parameters increases the feature dimension, which, is not conducive to the classification hyperplane search from the classification point of view. Moreover, the training costs will be greatly improved, while the speed of classification will be appropriately reduced.
To sum up, the diagnosis of thyroid disease is mainly carried out through studying the ultrasonic image texture features and the echo pattern at home and abroad. Research based on shape information is rare. Therefore, this paper makes quantitative analysis and study on morphological characteristics. Description of thyroid nodules’ morphological characteristic parameters is extracted and fused with texture and gray feature to analyze thyroid, so as to discriminate the tumor as benign or malignant. It offers a reference for the clinical thyroid nodule detection and diagnosis.
2 Segmentation of the Nodules’ Region
With the advantages of automatically processing topology changes, active contour segmentation based on level set becomes a widely used method in the field of image segmentation [16,17]. The basic idea is to represent contour as the zero-level set of the level set function, then the level set function is embedded to the curve evolution equation. The evolution of the curve is obtained through the evolution of its zero-level set. In this paper, we choose the classic DRLSE model as the prototype of the segmentation model. The relevant theoretical of the DRLSE model and the disadvantages existing in practical application will be described as follows.
The DRLSE model, proposed by [18], is a variational level set partitioning method based on edge information. Its energy functional is as follows:
where
where
DRLSE model features simple numerical solution and speedy convergence. Moreover, it does not need to reinitialize the level set. However, for the segmentation of medical ultrasound images, due to the low contrast between tissues and organs in ultrasound images, fuzzy boundary, intensity inhomogeneity in images before and after ultrasonic field, the
The problem is that when an edge-stopping function deals with weak edges, it is not zero at the weak edge due to the relevant small gradient of the weak edge [19]. Therefore, it is necessary to search for a new edge-stopping function which can guarantee the convergence at the weak boundary.
Considering the importance and the stability of the phase information, this paper tries to use phase information to segment the thyroid ultrasound image. We design an edge-stopping function that combines phase information with gradient information, replace the edge-stopping function based on gradient in DRLSE model and solve the problem that the evolution curve cannot be stopped at the target boundary in DRLSE model.
2.2 Phase Coherence Thyroid Nodule Segmentation Analysis
The phase congruency detection is a new method to detect features. Rather than detecting based on intensity gradient features, it analyzes the mutation location of image gray level from the frequency domain [20]. Studies have shown that image features perceived by human eyes are often located in the high point of phase congruency, while edge detection of phase congruency is assumed that the most congruent phase points of the Fourier components in the image were feature points. Thus, edge detection is a more reliable way than the conventional gradient calculation method. Based on this principle, Morrone et al. [21] defined the phase congruency function:
where
Therefore, a boundary indicator function based on the phase congruency operator and gradient operator is proposed in this paper. Let
In light with the Fig. 3, a 3D comparison of the effects is shown. The comparison is between the original edge-stopping function based on the gradient information and the edge-stopping function combining the phase information with the gradient information for thyroid ultrasound images at the tumor edge. It can be seen that the improved boundary function convergent at the weak boundary.
2.3 Level Set of the Segmentation Model Improvement
Based on geometric evolutionary theory and partial differential equations theory, we use boundary indicator function
where
The descent flow equation is the evolution equation of the level set segmentation model that combines the phase with gradient information. Fig. 4 shows the effect of image segmentation of the above algorithm.
On the basis of segmentation, the feature extraction of nodules is carried out. In clinic, doctors discriminate the thyroid nodules as malignant or benign according to nine parameters: morphology of nodules, boundary, capsule, acoustic halo, depth-width ratio, internal echo, calcification spot, rear echo and blood flow. Among these features, shape, boundary, capsule, acoustic halo and depth-width ratio can be described through contour feature extraction of the nodules. While internal echo, calcification spot, rear echo can be described through the gray and texture since they are related to the gray distribute on of thyroid nodule ultrasound image. Therefore, this paper puts forward a new feature extraction algorithm that combines the feature of the information of shape, texture and gray of the ultrasonic image for discrimination of benign and malignant thyroid nodules.
On the basis of segmentation, contour features of nodule, including shape, orientation and edge, extract the features of nodules’ circularity, depth-width ratio, the average direction number, the standard deviation of the normalized radial length, roughness index and envelope and acoustic halo [22]. The circularity, the average direction number and the standard deviation of normalized radial length of nodules are parameters which are associated with the nodule shape (reflecting the irregular degree of nodules). The depth-width ratio reflects the growth pattern of nodules. Roughness index describes the nodules (Burr) edge, while envelope and acoustic halo features reflect whether the nodules have envelope and acoustic halo or not.
(1) Circularity (Roundness)
Assuming that the whole area of the tumor is
Image is composed of pixels, so L can be represented by the number of pixels on the edge. S can be represented by the number of pixels on the edge. The closer to circle the tumor shape is, the bigger E value will be, and the more likely the tumor is benign, and vice versa.
(2) Standard deviation of the normalized radial length
The distance between the centroid of the tumor area and the edge of the image is considered as the radial length of the tumor, as shown in Fig. 5.
Normalized radial length is obtained by normalizing the radial length, as shown in the following:
where
The principle that discriminates benign and malignant tumor through the standard deviation of normalized radial length macroscopically reflects the similarity between the contour and the circle.
The smaller the standard deviation is, the more similar to circle the target is, and the more likely is benign tumor.
(3) Average direction number
In the process of edge extraction, we set the angle between any pixel and the adjacent pixel as
The average direction number is mainly used to reflect the smooth degree of the tumor edge, the smoother the edge is, the smaller the average direction is.
(4) Depth-Width Ratio (DWR)
In clinical, DWR is a frequently applied quantitative feature of thyroid ultrasound.
In some extent, it reflects the growth pattern of tumor. It is generally considered that if the DWR is less than 1, the malignant degree of tumor is low.
(5) Boundary roughness R
The roughness is the average of the sum of the absolute value of the difference of standard radius of the adjacent two points on the edge in clockwise or counterclockwise direction. Obviously, the rougher the edges are (and sometimes more Burr), the bigger value it will be, and the more likely for it is cancer.
(6) The envelope and acoustic halo feature
The description of the edge feature of benign nodules generally involves envelope and acoustic halo. The quantification of edge features can be calculated through the gray distribution [23] at the adjacent areas of the nodules’ boundary. In the level set method, two strip areas which locate inside and outside of the nodule can be obtained. We respectively took a level set function −0.5, 0 and 0.5, among which the level set −0.5 corresponds to the nodule interior, level set 0 corresponds to the nodule boundary and level set 0.5 corresponds to the nodule exterior, as shown in Fig. 6.
Assume that the numbers of pixel in the internal and external strip areas are
where
where
Two frequently used clinical features are extracted based on the gray information of the ultrasound image of thyroid gland, which are attenuation coefficient (AC) and micro calcium degree.
(1) Attenuation coefficient
Posterior echo is an important criterion for clinicians to diagnose thyroid tumor. For benign tumors, posterior echo is obviously enhanced. And for malignant tumors, posterior echo is obviously attenuated. Hence, we use the attenuation coefficient to do quantitative processing. A rectangular region of interest is selected from the direction which the tumor region and its posterior echo region appear the biggest change. The attenuation coefficient is defined as the average gray level ratio of the tumor region and the posterior echo region. The average gray levels of region of interest (ROI) in tumor area and posterior echo area are:
where the height and width of ROI are
(2) Micro calcification degree
Calcification in the nodule is a common feature in thyroid ultrasound images. Calcification can be divided into three types: Micro calcification:
The micro calcification degree can well reflect the existence and degree of micro calcification in the nodules.
3.3 Texture Feature Extraction
3.3.1 Local Two Valued Pattern
Deriving from a definition of local neighbor texture, the local binary pattern is a texture measurement within the gray scale [24]. It uses the structural method to analyze the fixed window features and the statistical method to extract the whole feature. The initial LBP operator is defined as: set one pixel
where
Theory of LBP algorithm is simple, while it can reflect the subtle variations among texture without parameter setting problem getting involved. Comparing with other methods, it is a fast and efficient texture description operator. However, it is obviously unreasonable if all cases are treated with single mapping transformation. For example, if the center pixel gray level is 60, while its adjacent pixel’s gray level is 59. In this case, coding the pixel as 0 is obviously unreasonable. Moreover, LBP operator usually applies the LBP histogram as the texture feature of regional description. If feature dimension is too large, from the classification point of view, it causes difficulty in searching the classification hyperplane and improves the training cost. To overcome these shortcomings, literature [14,15] proposed the FLBP algorithm, carrying out fuzzy coding for the distance. But the coding number will increase along with different fuzzy degree, causing the curse of dimensionality. Hence, based on this algorithm, this paper makes an improvement on it. According to sensory awareness, most of the nodules in thyroid ultrasound image are in elliptical shape. We improve the neighborhood and use elliptical local binary pattern (ELBP) to encode the thyroid ultrasound image.
3.3.2 Thyroid Ultrasound Feature Extraction Algorithm Based on Fuzzy Elliptical Local Binary Pattern
(1) The neighborhood improvement
In the ELBP method, the distribution of the neighborhood pixels is in elliptical shape, as shown in Fig. 7. There are three related parameters: ① the axis of the ellipse is denoted by
The X, Y coordinates of each neighborhood pixels
where
(2) The distance coding improvements
We can see in literature [14,15] that the parameter F is introduced to better describe the spatial structure of the local image texture. As described before, classic LBP uses a single LBP code to describe a
where
Based on the above literature, to select the center value more reasonably, we multiply the LBP codes appeared in each texture primitive by its corresponding weight and then sum them and round up the result. The FLBP code value which described the spatial structure of local image texture is obtained expressed as:
The improved fuzzy elliptical local binary pattern (FELBP) operator is applied on image processing, and the processed images are shown in Fig. 8.
Fig. 8a is the original image, while Figs. 8b–8e are the FELBP images when the F value is taken as 0, 5, 10, 15, respectively. It can be seen that Fig. 8b, the one with smaller F value, depicts more texture details relatively. At the meantime, its noise is more obvious. Fig. 8e with a larger F value mainly describes the edge outline information of the thyroid image, especially the edge of nodules and the trachea. And some smaller textures are filtered out. Figs. 8c and 8d with middle F values describe the texture information of middle layers. In general, with the increasing F values, detailed texture information in image described by FELBP is gradually weakened, while contour information such as edge information is gradually enhanced.
In order to find the most suitable feature subspace to classify benign and malignant thyroid, we adjust the fuzzy degree parameter F value to seek the best classification performance. Taking
SVM has good generalization performance in dealing with situations like small sample, nonlinearity and high dimension, which conforms exactly to the actual situation of thyroid samples. But in the standard SVM algorithm [27], samples are assumed to be distributed evenly, while in practical thyroid tumor classification, the samples of benign and malignant thyroid tumor are uneven. SVM would overfit the class with more samples and underestimate the commission errors due to less samples, leading to an overall low classification performance of SVM.
Due to the uneven samples, the predicted result appears with a bias towards class with more samples since the standard SVM regards different kinds of penalty parameter as the same. Therefore, this article introduces a weighting factor, by giving different weights to different classes of sample, to get the SVM based on the weighted degree of SVM, thus effectively compensates the shortcoming of low classification accuracy for small sample class.
In the SVM that based on weighted degree, the original problem can be expressed as:
where
The following steps are summarized to implement the classification model in this paper:
(1) Segment the nodule region and extract the nodule boundary based on the segmentation to obtain the 6 shape feature parameters: the nodule circularity, depth-width ratio, average direction number, the standard deviation of normalized radial length, roughness index, envelope and acoustic halo features;
(2) According to the gray level information of the thyroid ultrasound image, obtain the quantitative values of the two commonly used clinical features, the attenuation coefficient and the micro calcification degree;
(3) Operate FELBP to get FELBP image, calculate the entropy of the nodule region in the operated image and take it as the texture feature;
(4) Combine the quantitative values of the calculated shape, gray level and texture features into a nine-dimension feature vectors as the input of subsequent classifier. The feature values of these clearly diagnosed cases are used to train the classifier through cross validation, so as to achieve the optimal parameters of the classifier. Use the classifier with optimal parameters to identify the benign and malignant thyroid nodules.
To evaluate B-ultrasound examination results correctly and improve the accuracy of the discrimination on benign and malignant thyroid nodules, this study cooperates with the departments of ultrasound in Qinhuangdao First Hospital and Affiliated Hospital of Hebei University. All the images are derived from the ultrasound diagnosis departments of these two hospitals. The images in this paper are collected from patients aged from 20 to 45 during the period from December 1st, 2011 to March 1st, 2013. Among these images, there are 240 in total which are involved in the test, including 150 benign thyroid nodules images and 90 malignant ones, which are diagnosed by hospital experts and confirmed by postoperative pathology. The ultrasonic diagnostic meters being used are Philips iU22 as well as HDI 5000 Sono color ultrasonic diagnostic meter with 7~12 MHz probe frequency.
Parameters selection is very important in the classification of SVM classifier for inappropriate parameters which often leads to poor classification results. This paper uses cross validation method [28] and exhaustive method to test different values of all parameters by trial and error and finally obtain the best parameters group.
There are 240 groups of thyroid images feature data, among which 90 groups are labeled as (−1), and 150 groups are labeled as (+1). The asymmetric amount ratio of the two types of sample data is about 1:2. Dividing the data into 3 parts, we analyze the data with the cross-validation method. The parameter selection is realized by 3 cross validation: firstly, the training sample is divided into 3 parts, one is set as the test set and the other two as the training sets, and then rotate the three samples till every sample to be test set for once, which means every sample are going through a process of training and forecasting for 3 times. The kernel function of SVM includes Sigmoid kernel function, Gauss kernel function, RBF kernel function and polynomial kernel function as shown in Fig. 10.
Two significantly changed lines in the figure above are RBF [29] kernel and polynomial kernel functions. When
Fig. 11 shows that choosing different kernel parameters in polynomial kernel will result in different effects on the classification accuracy. When
For a diagnosis system, three indicators are doctors’ priority concern, which are accuracy, sensitivity and specificity. Sensitivity reflects the system recognition rate to malignant tumor. The higher sensitivity is, the higher recognition rate to malignant tumor will be. While specificity reflects the system recognition rate to benign tumor. The higher specificity is, the lower rate of benign samples will be wrongly accused of malignant. As defined in Tab. 1.
The extracted feature vectors are input into different classifiers to analyze and compare the performance of the classification. The experiments of each classifier are conducted 10 times, respectively recording different feature extraction algorithms as well as the average classification performance of the 10 experiments. And referring to the evaluation criteria, accuracy, sensitivity and specificity of the classification results are obtained. The performance comparison among different feature extraction algorithms and different classifiers is shown in Tab. 2.
LBP represents traditional local binary pattern; GLCM (Grey-Level Co-occurrence Matrix) is proposed in [9], which is the feature extraction algorithm based on the gray level co-occurrence matrix of thyroid tumor; FELBP is an updated fuzzy elliptic local binary pattern, improving the coding of neighborhood and distance of LBP; LBP-A-S and FELBP-A-S are fusion feature methods that combine attenuation and shape features on the basis of LBP and FELBP, respectively. It can be seen in Tab. 2 that the proposed method in this paper features the highest classification stability and accuracy under above experimental conditions. Using computer-aided diagnosis aims to improve specificity under 100% sensitivity, ensure all samples in the malignant categories identified as malignant and reduce the situations that benign tumors being mistaken for malignant under the condition that all the malignant samples can be detected. In this way, most of the benign samples would not send to the biopsy, which can reduce the amount of biopsy.
From Tab. 2, we can know that the weighted degree of SVM introduced in this paper efficiently compensate the adverse effect to the classification and prediction accuracy of small class samples caused by unbalanced sample size in each class by giving different classes of samples with different weights. After all, the proposed method has better image segmentation effect, and archive a higher objective evaluation index, and it is worthy to be extended to practical application.
Under the research and application background of the ultrasound diagnosis of thyroid nodules, this paper takes the database of thyroid nodules ultrasound images in hospitals as the research object, and combines existing medical conditions with computer technology, image processing technology, artificial intelligence technology and data analysis to process and analyze ultrasound images with computer. Moreover, this paper puts forward an automatic diagnosis system of thyroid nodules based on ultrasound images (TN-CAD). In this system, firstly the level set active contour model of the phase and gradient information is used to complete automatic boundaries extraction of thyroid tumor images, and then a feature extraction algorithm which is specific to thyroid nodule is explored. Finally, an improved support vector machine (SVM) is used for benign and malignant discrimination on thyroid nodules. Experimental results show the effectiveness of the proposed algorithm.
Acknowledgement: Thank you for the supported by the High-Performance Computing Center of Hebei University.
Funding Statement: This work was supported in part by National Natural Science Foundation of China under Grant Nos. 61572063 and 61401308, Natural Science Foundation of Hebei Province under Grant Nos. F2016201142, F2018210148, F2019201151 and F2020201025, Science Research Project of Hebei Province under Grant Nos. BJ2020030, QN2016085 and QN2017306, Foundation of President of Hebei University under Grant No. XZJJ201909, Opening Foundation of Machine Vision Technology Innovation Center of Hebei Province under Grant Nos. 2018HBMV01 and 2018HBMV02, Natural Science Foundation of Hebei University under Grant Nos. 2014-303 and 8012605.
Conflicts of Interest: The authors declare that they have no conflicts of interest to report regarding the present study.
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